From bioconductor.org
Tagging Bioconductor packages with EDAM – Bioconductor community blog
0 0
Adopting formal ontology for labeling Bioconductor software and data
on Jul 18
From bioconductor.org
Bioconductor and ggplot2 4.0.0: What’s Changing and How to Prepare – Bioconductor community blog
0 0
Preparing for the upcoming update - key changes, potential breakages, and what developers and users can do
on Jul 7
From bioconductor.org
Bringing Bioconductor to Galaxy: A CoFest Collaboration – Bioconductor community blog
0 0
Written during CoFest at GBCC2025, this post shares training materials, introduces Galaxy tool wrapping, and previews what’s next for integrating Bioconductor tools in Galaxy.
on Jul 3
From bioconductor.org
0 0
This package takes a list of p-values resulting from the simultaneous testing of many hypotheses and estimates their q-values and local FDR values. The q-value of a test measures the proportion of false positives incurred (called the false discovery rate) when that particular test is called...
on Jun 22
From bioconductor.org
Bioconductor Training partners with Physalia Courses – Bioconductor community blog
0 0
A new collaboration to expand access to bioinformatics training through co-branded courses, instructor support, and inclusive access.
on Jun 20
From bioconductor.org
0 0
scBubbletree is a quantitative method for the visual exploration of scRNA-seq data, preserving key biological properties such as local and global cell distances and cell density distributions across samples. It effectively resolves overplotting and enables the visualization of diverse cell...
on Jun 6
From bioconductor.org
Bioconductor is Moving from Slack to Zulip for Community Chat – Bioconductor community blog
0 0
A blog for the Bioconductor community!
on Jun 4
From bioconductor.org
Ask and you shall receive – Bioconductor community blog
0 0
Discussion of evolving complexity and value of the Bioconductor ecosystem.
on May 27
From bioconductor.org
Bioconductor in Africa: Highlights from Our First In-Person Course – Bioconductor community blog
0 0
A blog for the Bioconductor community!
on May 21
From bioconductor.org
0 0
Shared order between genomic sequences provide a great deal of information. Synteny objects produced by the R package DECIPHER provides quantitative information about that shared order. SynExtend provides tools for extracting information from Synteny objects.
on Apr 25
From bioconductor.org
Outreachy December 2024 Interns with Bioconductor – Bioconductor community blog
0 0
Bioconductor participated in the Outreachy Internship program for the December 2024 to March 2025 cohort. Our interns share their experience working on their various projects and Bioconductor in general.
on Apr 23
From bioconductor.org
0 0
MetaboDynamics is an R-package that provides a framework of probabilistic models to analyze longitudinal metabolomics data. It enables robust estimation of mean concentrations despite varying spread between timepoints and reports differences between timepoints as well as metabolite specific...
on Apr 17
From bioconductor.org
Bioconductor - Bioconductor 3.21 Released
0 0
The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists.
on Apr 16
From bioconductor.org
0 0
Statial is a suite of functions for identifying changes in cell state. The functionality provided by Statial provides robust quantification of cell type localisation which are invariant to changes in tissue structure. In addition to this Statial uncovers changes in marker expression associated...
on Mar 13
From bioconductor.org
0 0
Dot plots of single-cell RNA-seq data allow for an examination of the relationships between cell groupings (e.g. clusters) and marker gene expression. The scDotPlot package offers a unified approach to perform a hierarchical clustering analysis and add annotations to the columns and/or rows of a...
on Mar 6
From bioconductor.org
Bioconductor Community Advisory Board – Bioconductor community blog
0 0
An introduction to the new Co-Chair
on Mar 5
From bioconductor.org
0 0
The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists.
on Mar 4
From bioconductor.org
Bioconductor Carpentry: Celebrating Two Years of Global Training – Bioconductor community blog
0 0
A blog for the Bioconductor community!
on Mar 3
From bioconductor.org
0 0
doubletrouble aims to identify duplicated genes from whole-genome protein sequences and classify them based on their modes of duplication. The duplication modes are i. segmental duplication (SD); ii. tandem duplication (TD); iii. proximal duplication (PD); iv. transposed duplication (TRD) and;...
on Feb 27
From bioconductor.org
Open Science Mentoring: My Journey with Outreachy Mentees – Bioconductor community blog
0 0
A blog for the Bioconductor community!
on Feb 27
From bioconductor.org
European Bioconductor Conference 2025
0 0
EuroBioC2025 is the European edition of the Bioconductor conference that will take place on September 17th to 19th, 2025, in Barcelona, Spain. EuroBioC2025 will bring together the Bioconductor community to showcase the latest cutting-edge developments on the Bioconductor software packages, as...
on Feb 20
From bioconductor.org
0 0
Join us for a comprehensive week-long Bioconductor in-person course covering genomic data analysis and RNA-seq using R and Bioconductor.
on Jan 28
From bioconductor.org
2024 SpatialData Workshop – Bioconductor community blog
0 0
R/Bioconductor developers participating in the 1st scverse SpatialData Workshop
on Jan 9
From bioconductor.org
0 0
Join us for a comprehensive week-long Bioconductor in-person course covering genomic data analysis and RNA-seq using R and Bioconductor.
on Dec 24
From bioconductor.org
0 0
Use BridgeDb functions and load identifier mapping databases in R. It uses GitHub, Zenodo, and Figshare if you use this package to download identifier mappings files.
on Oct 31
From bioconductor.org
Bioconductor - Bioconductor 3.20 Released
0 0
The Bioconductor project aims to develop and share open source software for precise and repeatable analysis of biological data. We foster an inclusive and collaborative community of developers and data scientists.
on Oct 31
From bioconductor.org
0 0
Provides `dplyr` verbs (`mutate`, `select`, `filter`, etc...) supporting `S4Vectors::DataFrame` objects. Importantly, this is achieved without conversion to an intermediate `tibble`. Adds grouping infrastructure to `DataFrame` which is respected by the transformation verbs.
on Oct 28
From bioconductor.org
EuroBioC2024 conference recap – Bioconductor community blog
0 0
Highlights from the 2024 Bioconductor European Conference in Oxford.
on Sep 20
From bioconductor.org
BioC2024 conference recap – Bioconductor community blog
0 1
Highlights from the 2024 Bioconductor North American Conference in Grand Rapids.
on Aug 13, 2024
From bioconductor.org
Beatriz Calvo-Serra: inaugural Bioconductor Athena Award winner – Bioconductor community blog
0 1
Celebrating Bea’s contributions, resilience, and the inaugural Bioconductor Athena Award in her honor.
on Jul 30, 2024
From bioconductor.org
0 0
This package provides functionality to combine the existing pieces of the transcriptome data and results, making it easier to generate insightful observations and hypothesis. Its usage is made easy with a Shiny application, combining the benefits of interactivity and reproducibility e.g. by...
on Jul 27, 2024
From bioconductor.org
Bioconductor highlights from the CZI Open Science Meeting – Bioconductor community blog
0 0
A blog for the Bioconductor community!
on Jul 26, 2024
From bioconductor.org
0 0
Announcing a new collaboration between R-Ladies and Bioconductor
on Jul 21, 2024