From ropensci.org
Capturing Screenshots Programmatically With R
1 1
As part of our work documenting R-Universe, we’re adding screenshots of the interface to the documentation website. Taking screenshots manually could quickly become very cumbersome, especially as we expect they’ll need updating in future: we might want to change the universes we feature, the...
on Sep 10
From ropensci.org
Getting Bibliographic Records from OpenAlex Database Using DSL API
1 1
A set of tools to extract bibliographic content from OpenAlex database using API <https://docs.openalex.org>.
#oss #rstats #PeerReviewed #apackageaday
on Sep 6
From ropensci.org
R Interface to the Species+ Database
0 1
A programmatic interface to the Species+ <https://speciesplus.net/> database via the Species+/CITES Checklist API <https://api.speciesplus.net/>.
on Wed, 11AM
From ropensci.org
Acquisition and Processing of NASA Soil Moisture Active-Passive (SMAP) Data
0 1
Facilitates programmatic access to NASA Soil Moisture Active Passive (SMAP) data with R. It includes functions to search for, acquire, and extract SMAP data.
on Tue, 6PM
From ropensci.org
Functions to mine endoscopic and associated pathology datasets
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This script comprises the functions that are used to clean up endoscopic reports and pathology reports as well as many of the scripts used for analysis. The scripts assume the endoscopy and histopathology data set is merged already but it can also be used of course with the unmerged datasets.
on Tue, 9AM
From ropensci.org
Social Coworking and Office Hours - Working with Parquet in R
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Learn about using the Parquet file format in R.
on Mon, 7PM
From ropensci.org
Easily Download and Visualise Climate Data from CliFlo
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CliFlo is a web portal to the New Zealand National Climate Database and provides public access (via subscription) to around 6,500 various climate stations (see <https://cliflo.niwa.co.nz/> for more information). Collating and manipulating data from CliFlo (hence clifro) and importing into R for...
on Fri, 12PM
From ropensci.org
High Resolution World Vector Map Data from Natural Earth used in rnaturalearth
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Facilitates mapping by making natural earth map data from http:// www.naturalearthdata.com/ more easily available to R users. Focuses on vector data.
on Nov 14
From ropensci.org
Interface to Species Occurrence Data Sources
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A programmatic interface to many species occurrence data sources, including Global Biodiversity Information Facility (GBIF), iNaturalist, eBird, Integrated Digitized Biocollections (iDigBio), VertNet, Ocean Biogeographic Information System (OBIS), and Atlas of Living Australia (ALA). Includes...
on Nov 14
From ropensci.org
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This tool is for parsing public drug databases such as DrugBank XML database <https://go.drugbank.com/>. The parsed data are then returned in a proper R object called dvobject.
on Nov 12
From ropensci.org
OA week - A simple use case for programmatic access to PLOS full text
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Open access week is here! We love open access, and think it’s extremely important to publish in open access journals. One of the many benefits of open access literature is that we likely can use the text of articles in OA journals for many things, including text-mining. What’s even more awesome...
on Nov 12
From ropensci.org
Retrieve Data from the 1000 Plants Initiative (1KP)
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The 1000 Plants Initiative (www.onekp.com) has sequenced the transcriptomes of over 1000 plant species. This package allows these sequences and metadata to be retrieved and filtered by code, species or recursively by clade. Scientific names and NCBI taxonomy IDs are both supported.
on Nov 11
From ropensci.org
Base de Datos de Facil Acceso del Censo 2017 de Chile (2017 Chilean Census Easy Access Database)
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Provee un acceso conveniente a mas de 17 millones de registros de la base de datos del Censo 2017. Los datos fueron importados desde el DVD oficial del INE usando el Convertidor REDATAM creado por Pablo De Grande. Esta paquete esta documentado intencionalmente en castellano asciificado para que...
on Nov 9
From ropensci.org
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AIMS Data Platform API Client which provides easy access to AIMS Data Platform scientific data and information.
on Nov 7
From ropensci.org
0 0
A programmatic interface to FishBase, re-written based on an accompanying RESTful API. Access tables describing over 30,000 species of fish, their biology, ecology, morphology, and more. This package also supports experimental access to SeaLifeBase data, which contains nearly 200,000 species...
on Nov 6
From ropensci.org
Get Texts from the Perseus Digital Library
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The Perseus Digital Library is a collection of classical texts. This package helps you get them. The available works can also be viewed here: <http://cts.perseids.org/>.
on Nov 6
From ropensci.org
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`rfema` allows users to access The Federal Emergency Management Agencys (FEMA) publicly available data through their API. The package provides a set of functions to easily navigate and access data from the National Flood Insurance Program along with FEMAs various disaster aid programs, including...
on Nov 4
From ropensci.org
Using rotl to create phylogenetic trees
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rOpenSci package or resource used* rotl What did you do? Used rotl to create a phylogenetic tree using a species scientific name and included clipart for each animal using phylopic. URL or code snippet for your use case* Image Sector other Twitter handle @dosullivan019
on Nov 1
From ropensci.org
Access the Global Plant Phenology Data Portal
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Search plant phenology data aggregated from several sources and available on the Global Plant Phenology Data Portal.
on Nov 1
From ropensci.org
0 0
Queries the Flick API (https://www.flickr.com/services/api/) to return photograph metadata as well as the ability to download the images as jpegs.
on Oct 30
From ropensci.org
Open Trade Statistics API Wrapper and Utility Program
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Access Open Trade Statistics API from R to download international trade data.
on Oct 29
From ropensci.org
Automated Phylogenetic Sequence Cluster Identification from GenBank
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A pipeline for the identification, within taxonomic groups, of orthologous sequence clusters from GenBank <https://www.ncbi.nlm.nih.gov/genbank/> as the first step in a phylogenetic analysis. The pipeline depends on a local alignment search tool and is, therefore, not dependent on differences in...
on Oct 29
From ropensci.org
A comunidade R fala português · Community Call
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Uma apresentação de projetos de tradução comunitária para o português na comunidade R.
on Oct 28
From ropensci.org
rOpenSci Community Contributing Guide
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A guide to help people find ways to contribute to rOpenSci
on Oct 25
From ropensci.org
Extract Tables from PDF Documents
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Bindings for the Tabula <https://tabula.technology/> Java library, which can extract tables from PDF files. This tool can reduce time and effort in data extraction processes in fields like investigative journalism. It allows for automatic and manual table extraction, the latter facilitated...
on Oct 25
From ropensci.org
Get SNP (Single-Nucleotide Polymorphism) Data on the Web
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A programmatic interface to various SNP datasets on the web: OpenSNP (<https://opensnp.org>), and NBCIs dbSNP database (<https://www.ncbi.nlm.nih.gov/projects/SNP/>). Functions are included for searching for NCBI. For OpenSNP, functions are included for getting SNPs, and data for genotypes,...
on Oct 25
From ropensci.org
rsnps 0.5.0: New ncbi_snp_query() Features
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`ncbi_snp_query()` now returns all reported variant allele frequencies in dbSNP.
on Oct 25
From ropensci.org
An R package to download São Paulo and Rio de Janeiro air pollution data
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A package to download information from CETESB QUALAR <https://cetesb.sp.gov.br/ar/qualar/> and MonitorAr <http://jeap.rio.rj.gov.br/je-metinfosmac/institucional/index.html> systems. It contains function to download different parameters, a set of criteria pollutants and the most frequent...
on Oct 24
From ropensci.org
Chemical Information from the Web
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Chemical information from around the web. This package interacts with a suite of web services for chemical information. Sources include: Alan Wood's Compendium of Pesticide Common Names, Chemical Identifier Resolver, ChEBI, Chemical Translation Service, ChemSpider, ETOX, Flavornet, NIST...
on Oct 24
From ropensci.org
rOpenSci News Digest, October 2024
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CZI funding for Champions Program with Latin America focus, first time contributors, coworking, new package and package news
on Oct 23
From ropensci.org
Looking for Maintainers to Support First-Time Contributors
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Announcing a Community Call and Coworking sessions to support first contributions
on Oct 22
From ropensci.org
Extract and Tidy Canadian Hydrometric Data
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Provides functions to access historical and real-time national hydrometric data from Water Survey of Canada data sources (<https://dd.weather.gc.ca/hydrometric/csv/> and <https://collaboration.cmc.ec.gc.ca/cmc/hydrometrics/www/>) and then applies tidy data principles.
on Oct 22
From ropensci.org
0 0
rOpenSci package or resource used* tidyhydat What did you they do? This study focused on the effects of glacier melt on streamflow in the Canadian portion of the Columbia River headwaters over the period 1977 to 2017. Between 1985 and 2013, glacier coverage decreased by up to 2% of catchment...
on Oct 22
From ropensci.org
Download and Explore Datasets from UCSC Xena Data Hubs
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Download and explore datasets from UCSC Xena data hubs, which are a collection of UCSC-hosted public databases such as TCGA, ICGC, TARGET, GTEx, CCLE, and others. Databases are normalized so they can be combined, linked, filtered, explored and downloaded.
on Oct 21
From ropensci.org
eBird Data Extraction and Processing in R
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Extract and process bird sightings records from eBird (<http://ebird.org>), an online tool for recording bird observations. Public access to the full eBird database is via the eBird Basic Dataset (EBD; see <http://ebird.org/ebird/data/download> for access), a downloadable text file. This package...
on Oct 19
From ropensci.org
Access Data from the NASS Quick Stats API
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Interface to access data via the United States Department of Agricultures National Agricultural Statistical Service (NASS) Quick Stats' web API <https://quickstats.nass.usda.gov/api/>. Convenience functions facilitate building queries based on available parameters and valid parameter values....
on Oct 18
From ropensci.org
Bayesian Regression Analysis with Rstanarm (with GSODR for supporting data)
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Spotted in the wild. GSODR was used to provide the average daily temperature in degrees Celsius and the total daily precipitation in millimetres for this blog post. rOpenSci package or resource used GSODR What did you do? I just read the blog post, but the author used GSODR to fetch weather...
on Oct 17
From ropensci.org
Reproducible Data Science Environments with Nix
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Simplifies the creation of reproducible data science environments using the Nix package manager, as described in Dolstra (2006) <ISBN 90-393-4130-3>. The included `rix()` function generates a complete description of the environment as a `default.nix` file, which can then be built using Nix. This...
on Oct 17
From ropensci.org
Learning programming with Karel the robot
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This is the R implementation of Karel the robot, a programming language created by Dr. R. E. Pattis at Stanford University in 1981. Karel is an useful tool to teach introductory concepts about general programming, such as algorithmic decomposition, conditional statements, loops, etc., in an...
on Oct 16
From ropensci.org
Access Data from Marineregions.org: Gazetteer & Data Products
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Explore and retrieve marine geospatial data from the Marine Regions Gazetteer <https://marineregions.org/gazetteer.php?p=webservices> and the Marine Regions Data Products <https://marineregions.org/webservices.php>.
on Oct 16
From ropensci.org
General Purpose Client for ERDDAP Servers
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General purpose R client for ERDDAP servers. Includes functions to search for datasets, get summary information on datasets, and fetch datasets, in either csv or netCDF format. ERDDAP information: <https://upwell.pfeg.noaa.gov/erddap/information.html>.
on Oct 16
From ropensci.org
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Fomentar el software científico sostenible como pilar de la ciencia abierta en América Latina mediante la creación de capacidad y comunidad
on Oct 10
From ropensci.org
0 0
Foster sustainable scientific software as a pillar of open science in Latin America through building capacity and community
on Oct 10
From ropensci.org
Read EPUB File Metadata and Text
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Provides functions supporting the reading and parsing of internal e-book content from EPUB files. The epubr package provides functions supporting the reading and parsing of internal e-book content from EPUB files. E-book metadata and text content are parsed separately and joined together in a...
on Oct 9
From ropensci.org
Download and Parse Public Data Released by B3 Exchange
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Download and parse public files released by B3 and convert them into useful formats and data structures common to data analysis practitioners.
on Oct 8
From ropensci.org
Interface to the Global Biodiversity Information Facility API
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A programmatic interface to the Web Service methods provided by the Global Biodiversity Information Facility (GBIF; <https://www.gbif.org/developer/summary>). GBIF is a database of species occurrence records from sources all over the globe. rgbif includes functions for searching for taxonomic...
on Oct 8